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  "Title": "Maximizing Polyclonal Selection Gains Using Integer Programming",
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  "Description": "Implements an Integer Programming-based method for\noptimising genetic gain in polyclonal selection, where the goal\nis to select a group of genotypes that jointly meet multi-trait\nselection criteria. The method uses predictors of genotypic\neffects obtained from the fitting of mixed models. Its\napplication is demonstrated with grapevine data, but is\napplicable to other species and breeding contexts. For more\ndetails see Surgy et al. (2025)\n<doi:10.1007/s00122-025-04885-0>.",
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  "Date/Publication": "2026-03-03 11:00:48 UTC",
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