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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "maxRgain" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'maxRgain: Maximizing Polyclonal Selection Gains Using Integer Programming'
version: 1.1.0
identifiers:
- type: doi
  value: 10.32614/CRAN.package.maxRgain
abstract: Implements an Integer Programming-based method for optimising genetic gain
  in polyclonal selection, where the goal is to select a group of genotypes that jointly
  meet multi-trait selection criteria. The method uses predictors of genotypic effects
  obtained from the fitting of mixed models. Its application is demonstrated with
  grapevine data, but is applicable to other species and breeding contexts. For more
  details see Surgy et al. (2025) <https://doi.org/10.1007/s00122-025-04885-0>.
authors:
- family-names: Surgy
  given-names: Sónia
  email: soniasurgy@isa.ulisboa.pt
- family-names: Cadima
  given-names: Jorge
  email: jcadima@isa.ulisboa.pt
- family-names: Gonçalves
  given-names: Elsa
  email: elsagoncalves@isa.ulisboa.pt
preferred-citation:
  type: unpublished
  title: (Manuscript in preparation) maxRgain - A package to perform polyclonal selection
  authors:
  - family-names: Surgy
    given-names: Sónia
    email: soniasurgy@isa.ulisboa.pt
  - family-names: Cadima
    given-names: Jorge
    email: jcadima@isa.ulisboa.pt
  - family-names: Gonçalves
    given-names: Elsa
    email: elsagoncalves@isa.ulisboa.pt
  year: '2025'
  notes: (For the package)
repository: https://soniasurgy.r-universe.dev
repository-code: https://github.com/soniasurgy/maxRgain
commit: d7f36d545b9ca1e0e79e7dda2b687ca6bc6f7af6
url: https://github.com/soniasurgy/maxRgain
date-released: '2026-03-03'
contact:
- family-names: Surgy
  given-names: Sónia
  email: soniasurgy@isa.ulisboa.pt
references:
- type: article
  title: Integer programming as a powerful tool for polyclonal selection in ancient
    grapevine varieties
  authors:
  - family-names: Surgy
    given-names: Sónia
  - family-names: Cadima
    given-names: Jorge
  - family-names: Gonçalves
    given-names: Elsa
  journal: Theor Appl Genet
  year: '2025'
  volume: '138'
  doi: 10.1007/s00122-025-04885-0
  notes: (For the method)
  start: '122'